The Commissioners are appointed by the member churches and confirmed by the NCCA Triennial Forum.
The Commissioners for the period 2016 -2019 are;
| The Reverend Gerard Kelly (Chairperson) | Roman Catholic Church |
| The Right Reverend Doug Stevens | Anglican Church |
| The Reverend Jane Lee Baker | Anglican Church |
| The Reverend Fr Ninos Elya | The Holy Apostolic Catholic Assyrian Church of the East |
| Dr Maggie Kappelhoff | Churches of Christ |
| Rev Fr Athanasius Attia | Coptic Orthodox Church |
| Dr Philip Kariatlis | Greek Orthodox Church |
| Fr Pradeep Ponnachen | Indian Orthodox Church |
| The Reverend Andrew Brook | Lutheran Church in Australia |
| Peter Bennett | The Religious Society of Friends (Quakers Australia) |
| Birute Arendarcikas | Roman Catholic Church |
| Major Clayton Spence | The Salvation Army |
| The Reverend Dr Morag Logan | Uniting Church in Australia |
| Mr Damian Palmer | Uniting Church in Australia |
